3 Essential QuickBooks Integrations for E-Commerce Businesses You Might Not Know (+ 1 Bonus Tool)

E-commerce businesses have unique bookkeeping needs that go far beyond simple data entry. To stay competitive and maintain accurate financial records, integrating the right tools with QuickBooks Online (QBO) is key. While everyone knows about the basics like Shopify and PayPal, there are lesser-known integrations that can revolutionize how you manage your e-commerce finances.

Here are three underrated QuickBooks integrations every e-commerce business should consider, plus a bonus tool to give your operations an extra boost.

1. Bookkeep

Bookkeep is a powerful tool designed to automate your e-commerce accounting. It works across multiple platforms, such as Shopify, Etsy, Amazon, and Square, consolidating your data and posting it to QuickBooks accurately.

Why It’s Great:

• Automated Journal Entries: Bookkeep creates detailed daily sales summaries, ensuring that all income, fees, and taxes are correctly categorized in QuickBooks.

• Multi-Channel Support: Perfect for businesses selling on multiple platforms, saving time by consolidating all your sales data in one place.

• Audit-Ready Reports: Provides precise, transparent data that’s easy to review and export during tax time or audits.

Bottom Line: Bookkeep simplifies complex e-commerce transactions, giving you clean books without the need for manual reconciliation.

2. Webgility

Webgility is a robust integration for QuickBooks that bridges the gap between your e-commerce platform and your accounting system. It’s ideal for businesses that sell on platforms like WooCommerce, BigCommerce, and Magento.

Why It’s Great:

• Inventory Syncing: Keeps your inventory levels up to date across multiple sales channels, so you avoid overselling or running out of stock.

• Profitability Insights: Tracks real-time profit margins by factoring in all costs, such as shipping, fees, and taxes.

• Tax Compliance: Automatically calculates and records sales taxes for various jurisdictions, keeping you compliant without the hassle.

Bottom Line: Webgility is perfect for e-commerce businesses looking to integrate their QuickBooks with less mainstream platforms while gaining deep insights into their profitability.

3. Synder

Synder is a lesser-known but highly effective integration that automates data imports and reconciliation for payment platforms like Stripe, Square, and Etsy. It’s a great alternative to traditional tools for payment management.

Why It’s Great:

• Real-Time Syncing: Automatically syncs sales, payments, and refunds with QuickBooks in real time.

• Detailed Reporting: Breaks down every transaction, ensuring that fees, taxes, and tips are accurately recorded.

• Multi-Currency Support: Handles international transactions with ease, making it ideal for businesses with global reach.

Bottom Line: Synder takes the headache out of reconciling payment platform transactions, ensuring your books are always accurate.

Bonus Integration: Katana

If you manage inventory-heavy e-commerce operations, Katana is a game-changer. This manufacturing ERP software integrates seamlessly with QuickBooks, making it ideal for businesses producing or customizing products.

Why It’s Great:

• Real-Time Inventory Tracking: Syncs inventory data with QuickBooks, giving you an accurate view of stock levels and costs.

• Production Management: Tracks raw materials and production processes, so you can optimize operations and reduce waste.

• Order Fulfillment: Streamlines the order management process by syncing sales and purchase orders directly with QuickBooks.

Bottom Line: Katana is perfect for e-commerce businesses involved in manufacturing or customization, providing a level of control that basic inventory tools can’t match.

Conclusion

E-commerce bookkeeping doesn’t have to be overwhelming. With tools like Bookkeep, Webgility, Synder, and Katana, you can automate tedious processes, gain deeper insights, and keep your books audit-ready. These integrations aren’t as widely known but are incredibly powerful for e-commerce entrepreneurs who want to streamline their accounting.

Need help setting up these tools? At S & G Bookkeeping, we specialize in QuickBooks integrations for e-commerce businesses. Let us handle the setup so you can focus on growing your business. Contact us today to get started!